RnoEX0054984 @ rn6
Exon Skipping
Gene
ENSRNOG00000016695 | Mmp2
Description
matrix metallopeptidase 2 [Source:RGD Symbol;Acc:621316]
Coordinates
chr19:15563706-15565236:-
Coord C1 exon
chr19:15565088-15565236
Coord A exon
chr19:15564074-15564202
Coord C2 exon
chr19:15563706-15563879
Length
129 bp
Sequences
Splice sites
3' ss Seq
AGAGTCAATGTGGGTTTCAGAGC
3' ss Score
3.27
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GATCATTGGTTACACACCTGACCTGGACCCTGAGACAGTGGATGATGCCTTTGCTCGGGCCTTAAAAGTATGGAGCGACGTAACTCCACTACGCTTTTCTCGAATCCATGATGGGGAAGCTGACATCATGATCAACTTTGGTCGATGGG
Seq A exon
AGCATGGAGATGGATACCCATTTGACGGCAAGGACGGACTCCTGGCACATGCCTTTGCCCCGGGCACTGGTGTTGGGGGAGATTCTCACTTTGATGACGATGAGCTGTGGACTCTAGGAGAAGGACAAG
Seq C2 exon
TGGTCCGAGTAAAGTATGGGAACGCTGATGGCGAGTACTGCAAGTTCCCCTTCTTGTTTAATGGTCGGGAATACAGCAGCTGCACAGACACTGGCCGGAGTGACGGCTTCCTCTGGTGTTCCACCACGTACAACTTTGAGAAGGACGGCAAATATGGCTTCTGTCCCCACGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016695-'4-6,'4-5,6-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0041319=Peptidase_M10=FE(15.2=100)
A:
PF0041319=Peptidase_M10=FE(13.1=100)
C2:
PF0041319=Peptidase_M10=FE(17.6=100),PF0004014=fn2=WD(100=71.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGACGTAACTCCACTACG
R:
TCGTGGGGACAGAAGCCATAT
Band lengths:
249-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]