MmuEX6037310 @ mm10
Exon Skipping
Gene
ENSMUSG00000031740 | Mmp2
Description
matrix metallopeptidase 2 [Source:MGI Symbol;Acc:MGI:97009]
Coordinates
chr8:92831685-92833242:+
Coord C1 exon
chr8:92831685-92831833
Coord A exon
chr8:92832764-92832892
Coord C2 exon
chr8:92833069-92833242
Length
129 bp
Sequences
Splice sites
3' ss Seq
AGAGGCAATGTGGATTTCAGAGC
3' ss Score
1.86
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GATCATTGGTTACACACCTGACCTGGACCCTGAAACCGTGGATGATGCTTTTGCTCGGGCCTTAAAAGTATGGAGCGACGTCACTCCGCTGCGCTTTTCTCGAATCCATGATGGGGAGGCTGACATCATGATCAACTTTGGACGCTGGG
Seq A exon
AGCATGGAGATGGATACCCATTTGATGGCAAGGATGGACTCCTGGCACATGCCTTTGCCCCGGGCACTGGTGTTGGGGGAGATTCTCACTTTGATGATGATGAGCTGTGGACCCTGGGAGAAGGACAAG
Seq C2 exon
TGGTCCGCGTAAAGTATGGGAACGCTGATGGCGAGTACTGCAAGTTCCCCTTCCTGTTCAACGGTCGGGAATACAGCAGCTGTACAGACACTGGTCGCAGTGATGGCTTCCTCTGGTGCTCCACCACATACAACTTTGAGAAGGATGGCAAGTATGGCTTCTGCCCCCATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031740-'8-8,'8-5,9-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0041319=Peptidase_M10=FE(15.2=100)
A:
PF0041319=Peptidase_M10=FE(13.1=100)
C2:
PF0041319=Peptidase_M10=FE(17.6=100),PF0004014=fn2=WD(100=71.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACACACCTGACCTGGACCC
R:
CACCAGAGGAAGCCATCACTG
Band lengths:
258-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types