GgaEX6009926 @ galGal3
Exon Skipping
Gene
ENSGALG00000004297 | DNAH1
Description
NA
Coordinates
chr12:2922032-2922816:+
Coord C1 exon
chr12:2922032-2922181
Coord A exon
chr12:2922353-2922513
Coord C2 exon
chr12:2922591-2922816
Length
161 bp
Sequences
Splice sites
3' ss Seq
TGCTTTTGTGTCCGATACAGACC
3' ss Score
8.2
5' ss Seq
CAGGTACGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GAGAAGGTGAACGGCCTGGAGGTGGCCAAGCTGAGCGACCGGGACTTCCTCTGCAGTCTGGAAAAAGCCATTACTTATGGGAAGCCCTTCCTGCTGGAGAACGTTGGCGAGGAGCTGGACCCAGCCCTCGAACCCATCCTGCTCAAACAG
Seq A exon
ACCTACAAACAGCAAGGCAGAACGGTGCTGAAGCTGGGGGATGCGGTGATCCCTTACCACGAGGATTTCAAGCTGTACATCACCACCAACCTGTCCAACCCCCATTACAGCCCCGAGGTTTCCACAAAACTCACCCTCATCAACTTCACCATCTCACCCAG
Seq C2 exon
TGGCTTGGAGGACCAACTGCTGGGACAGGTGGTGGCCGAGGAGCGGCCTGACTTAGAAGAGGCTCGAAACCAGCTGATCCTTAGCAATGCTGAGATGCGCCAGGAGCTGGAGGAGATAGAAGACCAGATCCTGTATCGGCTCAGCACTTCCGAAGGAAACCCTGTGGATGACTTGGAGCTCATCAAAGTGCTAGAAGCATCCAAGCTCAAGGCAGGGGAGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297-'67-69,'67-68,68-69=AN
Average complexity
A_S
Mappability confidence:
88%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.039
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(21.0=100)
A:
PF127812=AAA_9=FE(22.7=100)
C2:
PF127812=AAA_9=FE(32.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTTCCTCTGCAGTCTGGA
R:
AGTGCTGAGCCGATACAGGAT
Band lengths:
257-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]