RnoEX6054801 @ rn6
Exon Skipping
Gene
ENSRNOG00000026914 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:RGD Symbol;Acc:621795]
Coordinates
chr16:7352309-7353464:-
Coord C1 exon
chr16:7353315-7353464
Coord A exon
chr16:7353060-7353220
Coord C2 exon
chr16:7352309-7352534
Length
161 bp
Sequences
Splice sites
3' ss Seq
GCCCATCTTACCTACTACAGACG
3' ss Score
5.62
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GAGAAGGAGAGTGGGCTAGATGTGTTCAAGCTGAGTGACCGCGACTTCCTGCGCAGCATGGAAAACGCTATCCGCTTTGGCAAGCCTTGCCTTCTGGAAAATGTGGGTGAGGAGCTGGATCCCGCACTGGAGCCCGTGTTGCTTAAGCAG
Seq A exon
ACGTACAAGCAGCAAGGGAACACAGTCCTGAAGTTGGGAGACACAGTGATCCCCTACCATGAGGACTTCAGGATGTACATTACCACCAAGCTGCCCAACCCTCACTATTCACCAGAGGTCTCCACCAAACTCACCCTCATCAACTTTACACTGTCACCCAG
Seq C2 exon
TGGCCTAGAGGACCAGCTACTGGGCCAGGTAGTGGCCGAGGAACGGCCTGATCTGGAAGAGGCCAAGAACCAGCTGATTATCAGTAATGCCAAGATGCGGCAGGAGCTAAAGGACATTGAGGACCAGATCCTGTACCGCCTCAGCTCCTCCGAGGGTAACCCTGTGGACGACGTGGAGCTTATCAAGGTGCTGGAGGCTTCCAAGATGAAGGCTGCTGAGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026914-'81-82,'81-80,82-82=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(21.3=100)
A:
PF127812=AAA_9=FE(23.0=100)
C2:
PF127812=AAA_9=FE(32.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTTCAAGCTGAGTGACCG
R:
CTTTAGCTCCTGCCGCATCTT
Band lengths:
242-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]