MmuEX6040562 @ mm10
Exon Skipping
Gene
ENSMUSG00000019027 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:MGI Symbol;Acc:MGI:107721]
Coordinates
chr14:31266640-31267861:-
Coord C1 exon
chr14:31267712-31267861
Coord A exon
chr14:31267455-31267615
Coord C2 exon
chr14:31266640-31266865
Length
161 bp
Sequences
Splice sites
3' ss Seq
GGCCCATTTGCCTACTACAGACG
3' ss Score
4.98
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GAGAGGGAAAGTGGGCTGGATGTATTCAAGTTGAGTGACCGTGACTTCCTGCGCAGCATGGAAAATGCTATCCGCTTTGGCAAGCCATGCCTTCTAGAAAATGTGGGTGAGGAGCTGGATCCGGCACTGGAGCCTGTGCTGCTTAAGCAG
Seq A exon
ACGTACAAGCAGCAAGGGAACATAGTCCTGAAGCTGGGAGACACAGTGATCCCTTACCATGAGGACTTCAGGATGTACATTACCACCAAGCTGCCCAATCCTCACTACTCACCAGAGATCTCCACCAAACTCACCCTCATCAACTTCACACTGTCACCCAG
Seq C2 exon
TGGCCTGGAGGACCAGCTACTGGGCCAGGTAGTGGCTGAGGAACGACCTGACCTGGAAGAGGCCAAGAACCAGCTGATTGTCAGTAATGCCAAGATGCGCCAGGAGCTGAAGGACATTGAGGACCAGATACTGTACCGCCTCAGTTCCTCCGAGGGCAACCCTGTCGATGACATGGAGCTCATCAAGGTGCTCGAGGCTTCCAAGATGAAGGCTGCTGAGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019027-'75-78,'75-77,76-78=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(21.2=100)
A:
PF127812=AAA_9=FE(22.9=100)
C2:
PF127812=AAA_9=FE(32.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGTGGGTGAGGAGCTGGAT
R:
CTCGAGCACCTTGATGAGCTC
Band lengths:
247-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types