Special

GgaEX6009977 @ galGal3

Exon Skipping

Gene
Description
NA
Coordinates
chr12:2947919-2948651:-
Coord C1 exon
chr12:2948582-2948651
Coord A exon
chr12:2948327-2948471
Coord C2 exon
chr12:2947919-2948150
Length
145 bp
Sequences
Splice sites
3' ss Seq
CTGTCACTGTCCCCTTCCAGCCA
3' ss Score
9.79
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
Exon sequences
Seq C1 exon
AGGATGTCTTTTTGCTGAGGACCAAGGATGGGAAGAACCCAGAGATCTATGCACTCTTCAGCACAGTCAG
Seq A exon
CCATGTCTTTCAGGGCTCCGCCGTCTGTGTCTACCGCATGGCCGACATCCGTGAAGTCTTCAACGGGCCCTTTGCCCACCGGGACAGCCCCCTCCACCAGTGGGGAGCCTACGAGGGCCGTGTGCCCTACCCGCGCCCGGGCGTG
Seq C2 exon
TGTCCCAGCAAGACCACCAACCAGCCCCGGAGGCCATACAGCAGCACCAAGGAGCTGCCTGACGAGGTGCTGCACTTTGCCCGCGCTCACCCCCTCATGTACAGGGCTGTGCGCCCACGGCATCACCGCCCGCTGCTGGTGAAGACTGACCTGCAGCAGCGCCTGCTCCAGCTTGTGGTGGACCGTGTAGATACTGAGGATGGGCAGCATGATGTCCTCTTCTTAGGGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004476-'5-8,'5-7,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.082 C2=0.205
Domain overlap (PFAM):

C1:
PF0140314=Sema=FE(5.9=100)
A:
PF0140314=Sema=FE(12.2=100)
C2:
PF0140314=Sema=FE(19.6=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACTCTTCAGCACAGTCAG
R:
GAAGAGGACATCATGCTGCCC
Band lengths:
243-388
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]