MmuEX6040484 @ mm9
Exon Skipping
Gene
ENSMUSG00000021904 | Sema3g
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G [Source:MGI Symbol;Acc:MGI:3041242]
Coordinates
chr14:32035745-32036706:+
Coord C1 exon
chr14:32035745-32035814
Coord A exon
chr14:32036106-32036250
Coord C2 exon
chr14:32036475-32036706
Length
145 bp
Sequences
Splice sites
3' ss Seq
TCCCTGTTTCCCTTTGGCAGTGC
3' ss Score
8.66
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
AGGATGTGTTCCTGCTGTGGCCCAAGGCCGGGAAGAGCCTCGAGGTGTATGCGCTGTTCAGCACTGTCAG
Seq A exon
TGCTGTGTTCCAGGGCTTTGCTGTCTGTGTGTACCACATGGTAGACATCTGGGAGGTCTTCAATGGGCCCTTTGCCCACCGAGATGGCCCTCAGCATCAGTGGGGACCCTATGGGGGCAAGGTGCCCTTCCCTCGCCCCGGTGTG
Seq C2 exon
TGTCCTAGCAAGATGACCGCACAGCCAGGCCGACCCTTTGGCAGCACCAAGGACTACCCAGACGAGGTGTTGCAGTTTGTCCGAGACCACCCACTCATGTTCCAGCCTGTGAGGCCTCGGCGTGGCCGCCCTGTCCTGGTCAAAACTCACTTGGCTCAGCGACTGCGCCAGATTGTGGTGGATCGAGTGGAGGCTGAGGATGGGACCTATGATGTCATCTTCCTAGGGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021904-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.082 C2=0.128
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(5.2=100)
A:
PF0140314=Sema=FE(10.8=100)
C2:
PF0140314=Sema=FE(17.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAAGAGCCTCGAGGTGTAT
R:
ATCCTCAGCCTCCACTCGATC
Band lengths:
242-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: