RnoEX6054742 @ rn6
Exon Skipping
Gene
ENSRNOG00000018952 | Sema3g
Description
semaphorin 3G [Source:RGD Symbol;Acc:1306079]
Coordinates
chr16:7308230-7309179:+
Coord C1 exon
chr16:7308230-7308299
Coord A exon
chr16:7308594-7308738
Coord C2 exon
chr16:7308948-7309179
Length
145 bp
Sequences
Splice sites
3' ss Seq
TCCCTGTCTGCCTTTGGCAGTGC
3' ss Score
7.73
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
AGGATGTGTTCCTGCTGTGGCCAAAGGCAGGGAAGAACCTCGAGGTGTATGCGCTGTTCAGCACTGTCAG
Seq A exon
TGCTGTGTTCCGGGGCTTTGCTGTCTGTGTGTACCACATGGTAGACATCTGGGAGGTCTTCAACGGGCCCTTCGCTCACCGAGATGGCCCTCAACATCAGTGGGGACCCTATGGGGGCAAGGTGCCCTTCCCCCGGCCTGGTGTG
Seq C2 exon
TGTCCCAGCAAGATGACCGCACAGCCCGGCCGACCCTTTGGCAGCACCAAGGACTACCCGGATGAGGTGCTGCAGTTTGTCCGAGGCCACCCGCTCATGTTCCAGCCTGTGAGGCCTCGGCGTGGCCGCCCCGTCCTGGTCAAAACTCACCTGGCTCAGCAACTGTGCCAGATCGTGGTGGACAGAGTGGAGGCTGAGGATGGGACCTACGATGTCATCTTCCTAGGGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018952-'14-12,'14-11,15-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.061 C2=0.103
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(5.2=100)
A:
PF0140314=Sema=FE(10.8=100)
C2:
PF0140314=Sema=FE(17.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAAGGCAGGGAAGAACCTC
R:
ATCCTCAGCCTCCACTCTGTC
Band lengths:
251-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]