GgaEX6014155 @ galGal3
Exon Skipping
Gene
ENSGALG00000006695 | BCR
Description
NA
Coordinates
chr15:8867815-8872369:-
Coord C1 exon
chr15:8872265-8872369
Coord A exon
chr15:8871573-8871758
Coord C2 exon
chr15:8867815-8867922
Length
186 bp
Sequences
Splice sites
3' ss Seq
TCCTTCATCTGTCATTTAAGCCT
3' ss Score
4.87
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
AGTGAGCCAGATCTGGAGAAAGGCCTGGAGATGAGAAAATGGGTCCTGTCAGGAATCCTGGCCAGTGAGGAAACCTACCTGAGCCATCTGGAGGCTCTGCTGCTG
Seq A exon
CCTATGAAGCCTTTGAAAGCAGCTGCCACCACCTCTCAGCCTGTGCTGACTAGTCAGCAGATTGAGACAATATTCTTCAAAGTGCCTGAGCTGTACGAGATCCACAAAGAATTCTATGATGGACTCTTTCCCCGAGTGCAGCAGTGGAGTCACCAGCAACGTGTCGGAGACCTCTTCCAAAAGCTG
Seq C2 exon
GCCAGCCAGCTGGGAGTGTACCGGGCCTTTGTGGATAACTATGAAGTTGCTATGGAGACAGCAGAGAAATGCTGCCAAGCCAATGCTCAGTTTGCTGAAATCTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006695-'3-10,'3-9,4-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=0.043 C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=PU(10.6=58.8)
A:
PF0062115=RhoGEF=FE(32.3=100)
C2:
PF0062115=RhoGEF=FE(18.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATCTGGAGAAAGGCCTGG
R:
GCTTGGCAGCATTTCTCTGC
Band lengths:
178-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]