RnoEX0014495 @ rn6
Exon Skipping
Gene
ENSRNOG00000001304 | Bcr
Description
BCR, RhoGEF and GTPase activating protein [Source:RGD Symbol;Acc:1307993]
Coordinates
chr20:14469328-14475043:-
Coord C1 exon
chr20:14474939-14475043
Coord A exon
chr20:14473433-14473618
Coord C2 exon
chr20:14469328-14469435
Length
186 bp
Sequences
Splice sites
3' ss Seq
TCACCTGTGCCACCCTCTAGCCC
3' ss Score
6.75
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
AGTGAGCTGGATTTGGAAAAGGGCTTGGAGATGAGGAAGTGGGTTTTGTCCGGAATCCTGGCCAGCGAGGAGACATACCTGAGCCATCTGGAGGCCCTGCTGCTG
Seq A exon
CCCATGAAGCCTCTGAAAGCCGCTGCCACCACGTCTCAGCCTGTGCTGACCAGCCAGCAGATTGAGACCATTTTCTTCAAAGTGCCTGAGCTCTACGAGATCCACAAGGAGTTCTATGACGGGCTCTTTCCCCGCGTACAACAGTGGAGCCACCAGCAGCGCGTGGGTGACCTCTTCCAGAAGCTG
Seq C2 exon
GCCAGCCAGCTGGGCGTGTACCGGGCCTTTGTGGATAACTACGGAGTGGCCATGGAAACTGCAGAGAAGTGCTGTCAGGCCAACGCTCAGTTTGCAGAAATCTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001304-'4-5,'4-3,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=0.048 C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=PU(10.6=57.1)
A:
PF0062115=RhoGEF=FE(32.3=100)
C2:
PF0062115=RhoGEF=FE(18.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGAGCTGGATTTGGAAAAGGG
R:
AGAGATTTCTGCAAACTGAGCGT
Band lengths:
210-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]