DreEX6050527 @ danRer10
Exon Skipping
Gene
ENSDARG00000042329 | BCR (1 of 2)
Description
breakpoint cluster region [Source:HGNC Symbol;Acc:HGNC:1014]
Coordinates
chr8:30537600-30551237:+
Coord C1 exon
chr8:30537600-30537704
Coord A exon
chr8:30537846-30538031
Coord C2 exon
chr8:30551130-30551237
Length
186 bp
Sequences
Splice sites
3' ss Seq
CCCCTTGTTTTTCTTCACAGCCC
3' ss Score
11.04
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
TCGGAACTAGATGCGGAAAAAGGCCTGGAGATGAGGAAATGGGTGTTATCTGGGATCCTGGCCAGTGAAGAGGCCTATCTCAGCCACTTGGAGGCGCTCTTAGTG
Seq A exon
CCCATGAAGCCCCTGAAAGCTGCTGCCACCACCTCTCAGCCCATGCTAACCCTCCAGCAGATAGAAACCATTTTCTTCAATGTGCCTGAGCTCCATGAGATACACAAAGACTTTTATGATGGTCTGTTACCCAGAGTGCAACAGTGGAGCAACCGCCAATGTGTGGGCGACCTCTTTCAGAAACTG
Seq C2 exon
GCCAGCCAGCTTGGCGTGTACAGAGCTTTTGTGGACAACTATAAGATTGCAGTGGAAACGGCTGAAAAGTGTTGCCAAGCCAATTCTCAGTTTGCTGAGATTTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042329-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.119 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=PU(10.8=57.1)
A:
PF0062115=RhoGEF=FE(32.8=100)
C2:
PF0062115=RhoGEF=FE(18.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTAGATGCGGAAAAAGGCCTG
R:
GCAAACTGAGAATTGGCTTGGC
Band lengths:
195-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]