HsaEX6025984 @ hg38
Exon Skipping
Gene
ENSG00000186716 | BCR
Description
BCR, RhoGEF and GTPase activating protein [Source:HGNC Symbol;Acc:HGNC:1014]
Coordinates
chr22:23260950-23268515:+
Coord C1 exon
chr22:23260950-23261054
Coord A exon
chr22:23261355-23261540
Coord C2 exon
chr22:23268408-23268515
Length
186 bp
Sequences
Splice sites
3' ss Seq
TCACTTGTGCCCTCTTCCAGCCC
3' ss Score
9.77
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
AGTGAGCTGGACTTGGAAAAGGGCTTGGAGATGAGAAAATGGGTCCTGTCGGGAATCCTGGCTAGCGAGGAGACTTACCTGAGCCACCTGGAGGCACTGCTGCTG
Seq A exon
CCCATGAAGCCTTTGAAAGCCGCTGCCACCACCTCTCAGCCGGTGCTGACGAGTCAGCAGATCGAGACCATCTTCTTCAAAGTGCCTGAGCTCTACGAGATCCACAAGGAGTTCTATGATGGGCTCTTCCCCCGCGTGCAGCAGTGGAGCCACCAGCAGCGGGTGGGCGACCTCTTCCAGAAGCTG
Seq C2 exon
GCCAGCCAGCTGGGTGTGTACCGGGCCTTCGTGGACAACTACGGAGTTGCCATGGAAATGGCTGAGAAGTGCTGTCAGGCCAATGCTCAGTTTGCAGAAATCTCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186716-'13-20,'13-13,16-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.030 C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=PU(10.6=57.1)
A:
PF0062115=RhoGEF=FE(32.3=100)
C2:
PF0062115=RhoGEF=FE(18.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCTGGACTTGGAAAAGGG
R:
TCGGAGATTTCTGCAAACTGAGC
Band lengths:
210-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains