GgaEX6014582 @ galGal4
Exon Skipping
Gene
ENSGALG00000000166 | DMB2
Description
Major histocompatibility complex class II beta chain BMA2, (similar to HLA class II, D beta chain) precursor [Source:RefSeq peptide;Acc:NP_001128638]
Coordinates
chr16:76300-76941:-
Coord C1 exon
chr16:76822-76941
Coord A exon
chr16:76483-76518
Coord C2 exon
chr16:76300-76398
Length
36 bp
Sequences
Splice sites
3' ss Seq
CCCTCCTATTCCCCCAACAGGTT
3' ss Score
11.29
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTCCTGGGCTGACGCTGGAGGTGACGCTGATGGTGGCTGTGGCCACTGTAGTGATGGTGTTGGGGCTCAGCTTGCTCTTCATTGGTGTCTACTGCTGGCGGGCCCAACCCCCTGCCCCAG
Seq A exon
GTTACGCCCCGCTTCCCGGTCACAACTACCCTTCAG
Seq C2 exon
GCAGCATCTGATGGACACCTTCTGTCACCAACTGTCCCTGTGTGTCCCCATCCCTGACTCTGCACCGTGGTGCTGACATTAAAGACACTCTGCAGCCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000166-'14-5,'14-4,16-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.077 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTAGTGATGGTGTTGGGGC
R:
ACAGGGACAGTTGGTGACAGA
Band lengths:
116-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]