HsaEX0030104 @ hg38
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr6:32934629-32936886:-
Coord C1 exon
chr6:32935536-32936886
Coord A exon
chr6:32935342-32935377
Coord C2 exon
chr6:32934629-32934987
Length
36 bp
Sequences
Splice sites
3' ss Seq
CAAGTATCTTCCTCTCTTAGGTT
3' ss Score
8.75
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
TTGGAGAAAGTAAGGAAGCAAACATTGTTACCGTGGGGGCAATGGAGAGGACAGTGAGGAGCCCTTTATCCTGATAAGGGTGGCTTTGGGGTAAAGGAAGGAAAGAGGATGCCTTGAGAGGCCCCACTGTATTAGAGAGGACCTGGAAGCCAGGATGCTAATTCTGGGGAGATGGGTTCCCCAGGCTTACTCTAGGAGTAGAGGTCCATGGGACGAGGGTTTGATTTGAGAAAGATCATTTTCTTGGGAGTGGGTGGTGTGAGCTAGACCCTTGGAGCTGGGATAAAGGACCTTTTAACCCACTGAGAGGTGGCTGCAATAAATGGAATTGCCCTGGGGGTGAGCAACAGAAACTGGGTCAAGTAAGTTTCTATTTTTTGCAGCACCTGGGCTGTCCCCCATGCAGACCCTGAAGGTTTCTGTGTCTGCAGTGACTCTGGGCCTGGGCCTCATCATCTTCTCTCTTGGTGTGATCAGCTGGCGGAGAGCTGGCCACTCTA
Seq A exon
GTTACACTCCTCTTCCTGGGTCCAATTATTCAGAAG
Seq C2 exon
GATGGCACATTTCCTAGAGGCAGAATCCTACAACTTCCACTCCAAGTGAGAAGGAGATTCAAACTCAATGATGCTACCATGCCTCTCCAACATCTTCAACCCCCTGACATTATCTTGGATCCTATGGTTTCTCCATCCAATTCTTTGAATTTCCCAGTCTCCCCTATGTAAAACTTAGCAACTTGGGGGACCTCATTCCTGGGACTATGCTGTAACCAAATTATTGTCCAAGGCTATATTTCTGGGATGAATATAATCTGAGGAAGGGAGTTAAAGACCCTCCTGGGGCTCTCAGTGTGCCATAGAGGACAGCAACTGGTGATTGTTTCAGAGAAATAAACTTTGGTGGAAATATTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000242574-'7-9,'7-8,8-9
Average complexity
C1
Mappability confidence:
0%=0=0%
Protein Impact
NA
Show PDB structure
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTGGTGTGATCAGCTGGC
R:
TGGAGAGGCATGGTAGCATCA
Band lengths:
128-164
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development