MmuEX7008166 @ mm10
Exon Skipping
Gene
ENSMUSG00000079547 | H2-DMb1
Description
histocompatibility 2, class II, locus Mb1 [Source:MGI Symbol;Acc:MGI:95922]
Coordinates
chr17:34159344-34160230:+
Coord C1 exon
chr17:34159344-34159460
Coord A exon
chr17:34159629-34159664
Coord C2 exon
chr17:34159929-34160230
Length
36 bp
Sequences
Splice sites
3' ss Seq
GATGTCTCTTCCTCTTCTAGGCT
3' ss Score
11.76
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
CACCTGGGCTGTCCCCCATCCAGACAGTGAAGGTCTCTGTGTCTGCAGCCACCCTGGGCCTGGGCTTCATCATCTTCTGTGTTGGCTTCTTCAGATGGCGCAAGTCTCATTCCTCCA
Seq A exon
GCTACACTCCTCTCTCTGGATCCACCTACCCGGAAG
Seq C2 exon
GACAGCATTAGAGAGCAGAACCCGGAACCAAGGAGATTCAGACTCCTGAGGATTCCTTAATGCCCCAACATCTTCAGGACACCCCACTTTCTTGTGTCATACTGCCTCTATTCAGGTCCCCTTCCTGAAATAAATATTAGTAGTTTGGGGGGGTATTTATAATGAAGTCTGTCCCAGGTGGGGGAGCTGAGGTGAGCTGAAATGAGGTGGGGGTTCAAGGCCTCCTGAGAGCCCCTCCTTGTCACGAGGGCACCGTGTCTTAGGTGATCACTAAGAAATAAACTGGTGGACTTTTGATTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079547-'11-8,'11-7,20-8=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.462 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGTCTCTGTGTCTGCAGC
R:
ATCTCCTTGGTTCCGGGTTCT
Band lengths:
126-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types