GgaEX6015026 @ galGal4
Exon Skipping
Gene
ENSGALG00000005045 | CDK9
Description
cyclin-dependent kinase 9 [Source:RefSeq peptide;Acc:NP_001006201]
Coordinates
chr17:4899618-4902154:-
Coord C1 exon
chr17:4902064-4902154
Coord A exon
chr17:4899954-4900120
Coord C2 exon
chr17:4899618-4899789
Length
167 bp
Sequences
Splice sites
3' ss Seq
CCTCCTTGCCTCTCCTGTAGCCT
3' ss Score
9.15
5' ss Seq
AAGGTAGTG
5' ss Score
5.56
Exon sequences
Seq C1 exon
TTCCCCATCACAGCTCTGCGAGAGATTAAAATCCTCCAGCTGCTCAAGCATGAGAATGTGGTGAACCTCATAGAAATCTGTAGGACCAAAG
Seq A exon
CCTCTCCATACAACCGCTGCAAGGGAAGTATCTACCTGGTGTTTGACTTCTGTGAGCACGACCTGGCTGGCCTTCTCAGCAACACCCACGTCAAGTTCACGCTCTCAGAGATCAAGAAAGTTATGCAGATGCTATTGAATGGACTGTATTACATCCACAGGAACAAG
Seq C2 exon
ATCTTGCATCGAGATATGAAAGCTGCAAACGTTCTGATCACGCGGGATGGAGTCCTGAAGCTTGCAGACTTTGGGCTGGCTCGAGCTTTCAGCCTGGCTAAGAACAGCCAGCCGAACCGCTACACCAACCGGGTCGTGACTCTGTGGTATCGGCCGCCGGAGCTGCTGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005045-'4-6,'4-5,6-6=AN
Average complexity
A_S
Mappability confidence:
88%=80=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(10.5=100)
A:
PF0006920=Pkinase=FE(19.3=100)
C2:
PF0006920=Pkinase=FE(20.0=100)
Main Skipping Isoform:
ENSGALT00000008092fB752
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATCACAGCTCTGCGAGA
R:
GCCGATACCACAGAGTCACGA
Band lengths:
242-409
Functional annotations
There are 1 annotated functions for this event
PMID: 23140174
Partially encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: alanine scanning, protein kinase assay, western blot. ELM ID: ELMI003213; ELM sequence: TKASPYNR; Overlap: PARTIAL_LEFT
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]