GgaEX6015199 @ galGal3
Exon Skipping
Gene
ENSGALG00000003887 | Q5ZHN8_CHICK
Description
NA
Coordinates
chr17:6557987-6558601:+
Coord C1 exon
chr17:6557987-6558076
Coord A exon
chr17:6558305-6558370
Coord C2 exon
chr17:6558533-6558601
Length
66 bp
Sequences
Splice sites
3' ss Seq
TCTTGCGTTGTTCTTTTCAGAGA
3' ss Score
10.43
5' ss Seq
AGTGTATCC
5' ss Score
-2.39
Exon sequences
Seq C1 exon
GTTCAGCAGAAACGATGGAAAGTGGAAACCAATTCCAGGCTGGATTCAGTCCTGTTGTTGTCGTCTATGAATTTACCTGGTGGGGAACTG
Seq A exon
AGAAGGAGATCGGCAGAAGACGAGCTTGCGATGAGGGACTATCTGCAGGAAGGGGACCTCATCAGT
Seq C2 exon
GCAGAGGTCCAGTCTGTATTTTCTGATGGGGCTGTATCGCTGCACACCAGGAGTCTGAAATACGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003887-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.136 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCAGCAGAAACGATGGAAAGTG
R:
CTTCCCGTATTTCAGACTCCTGG
Band lengths:
159-225
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]