RnoEX6016354 @ rn6
Exon Skipping
Gene
ENSRNOG00000009245 | Exosc2
Description
exosome component 2 [Source:RGD Symbol;Acc:1306573]
Coordinates
chr3:10156413-10158355:-
Coord C1 exon
chr3:10158266-10158355
Coord A exon
chr3:10157218-10157283
Coord C2 exon
chr3:10156413-10156481
Length
66 bp
Sequences
Splice sites
3' ss Seq
TGTGCTTCTGTGTGTTTCAGAGG
3' ss Score
10.99
5' ss Seq
AGTGTATCC
5' ss Score
-2.39
Exon sequences
Seq C1 exon
GTCCAACAGAAGAGGTGGAAGGTGGAGACCAACTCCAGGCTGGACTCCGTCCTGCTCCTCTCATCCATGAACCTACCTGGGGGAGAGCTG
Seq A exon
AGGAGAAGGTCGGCGGAGGATGAGCTGGCCATGAGAGGCTTCTTACAAGAAGGCGACCTCATCAGT
Seq C2 exon
GCGGAAGTCCAGGCTGTGTTCTCCGATGGAGCTGTTTCTCTGCACACGAGGAGCCTGAAGTACGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009245-'8-7,'8-5,9-7=AN
Average complexity
A_S
Mappability confidence:
89%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.136 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCAACAGAAGAGGTGGAAGG
R:
CTTTCCGTACTTCAGGCTCCT
Band lengths:
159-225
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]