GgaEX6015199 @ galGal4
Exon Skipping
Gene
ENSGALG00000003887 | EXOSC2
Description
exosome component 2 [Source:RefSeq peptide;Acc:NP_001012816]
Coordinates
chr17:5965417-5966001:+
Coord C1 exon
chr17:5965417-5965476
Coord A exon
chr17:5965705-5965770
Coord C2 exon
chr17:5965933-5966001
Length
66 bp
Sequences
Splice sites
3' ss Seq
TCTTGCGTTGTTCTTTTCAGAGA
3' ss Score
10.43
5' ss Seq
AGTGTATCC
5' ss Score
-2.39
Exon sequences
Seq C1 exon
AATTCCAGGCTGGATTCAGTCCTGTTGTTGTCGTCTATGAATTTACCTGGTGGGGAACTG
Seq A exon
AGAAGGAGATCAGCAGAAGACGAGCTTGCGATGAGGGACTATCTGCAGGAAGGGGACCTCATCAGT
Seq C2 exon
GCAGAGGTCCAGTCTGTATTTTCTGATGGGGCTGTATCGCTGCACACCAGGAGTCTGAAATACGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003887-'6-5,'6-4,7-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.136 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCAGGCTGGATTCAGTCCT
R:
CTTCCCGTATTTCAGACTCCTGG
Band lengths:
127-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]