GgaEX6015257 @ galGal4
Exon Skipping
Gene
ENSGALG00000003757 | POMT1
Description
protein O-mannosyl-transferase 1 [Source:RefSeq peptide;Acc:NP_001025856]
Coordinates
chr17:6224268-6225666:+
Coord C1 exon
chr17:6224268-6224414
Coord A exon
chr17:6224806-6224917
Coord C2 exon
chr17:6225601-6225666
Length
112 bp
Sequences
Splice sites
3' ss Seq
GTCTGTCTCTTTTCTGGCAGAGA
3' ss Score
8.81
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
AATACAGCATGAACGTTCCTGTGTGGTCCTTGCGGTTCCTGCCAGCACTGGCTGGTGCTCTCTGCATCCCCTTAGCATACCAGATTTTGGTAGAGCTGCAGTTCTCCCACTGTGCTGCGCTTGGAGCTGCTCTTCTGATTCTCTTAG
Seq A exon
AGAACTCTCTGATCACTCAGTCAAGGTTCATGCTTCTGGAATCCATATTGATTTTTTTTATCCTGCTTGCAGTTTTGTCCTACCTGAAGTTCTACAATTTGCAGAGGCACAG
Seq C2 exon
TTCCTTCTCCGGAGGGTGGTGGTTTTGGCTTCTGTTGACTGGAGTAGCTTGTTCTTGTGCTGTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003757-'11-8,'11-6,12-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0236613=PMT=FE(19.8=100)
A:
PF0236613=PMT=FE(14.9=100)
C2:
PF0236613=PMT=FE(12.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCATGAACGTTCCTGTGT
R:
CCAACAGCACAAGAACAAGCT
Band lengths:
210-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]