RnoEX0068257 @ rn6
Exon Skipping
Gene
ENSRNOG00000010477 | Pomt1
Description
protein-O-mannosyltransferase 1 [Source:RGD Symbol;Acc:620078]
Coordinates
chr3:11258709-11260656:+
Coord C1 exon
chr3:11258709-11258855
Coord A exon
chr3:11259913-11260024
Coord C2 exon
chr3:11260591-11260656
Length
112 bp
Sequences
Splice sites
3' ss Seq
CAGCTGTTTGTCTCTGACAGAGA
3' ss Score
6.88
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
AATACAGTAGCAATGTGCCTGTATGGTCCTTACGCCTGCTGCCGGCGCTTGCTGGGGCCCTGTCAGTACCCATGGCCTACCAGATAGTGTTGGAGCTCCACTTTTCCCACTGTACTGCCATGGGAGCCGCCCTGCTGATGCTCATTG
Seq A exon
AGAACGCCCTAATCACTCAGTCCAGGCTCATGCTGTTGGAATCCATACTGATATTTTTTAACCTCTTGGCCGTGTTGTCCTATCTGAAGTTCTTCAACTCCCAAACACACAG
Seq C2 exon
CCCTTTCTCAGTGCACTGGTGGCTGTGGCTAATGCTGACCGGAGTCTCTTGTTCCTGTGCGGTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010477_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0236613=PMT=FE(19.8=100)
A:
PF0236613=PMT=FE(14.9=100)
C2:
PF0236613=PMT=FE(12.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTAGCAATGTGCCTGTATGG
R:
CCAACCGCACAGGAACAAGAG
Band lengths:
210-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]