GgaEX6015330 @ galGal3
Exon Skipping
Gene
ENSGALG00000003175 | C9orf96
Description
NA
Coordinates
chr17:7561176-7562368:+
Coord C1 exon
chr17:7561176-7561220
Coord A exon
chr17:7561534-7561608
Coord C2 exon
chr17:7562264-7562368
Length
75 bp
Sequences
Splice sites
3' ss Seq
TTTTTATTTATTCTATGCAGGCA
3' ss Score
8.8
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GTTGAATGCATTGATGAAAAGCAAGCAAATGAGGCCTTGAAGGAG
Seq A exon
GCAATGGGTTTGCTACAACTTCATCATTCAAGCATCTGTGCTTACAAGGAAATGTTTGTGACTTGGGATAATGAG
Seq C2 exon
ATATCATCTCTGTACCTTTGTCTGGTAATGCAGCACTCAGGCCAAGTGGATCTTTCATCTCTGATCAAGACAAAAAGGCAGAAGCCAGAGAAAATAGCAGACGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003175-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(5.2=100)
A:
PF0006920=Pkinase=FE(8.9=100)
C2:
PF0006920=Pkinase=FE(12.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATTGATGAAAAGCAAGCA
R:
CACGTCTGCTATTTTCTCTGGCT
Band lengths:
144-219
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]