GgaEX6015330 @ galGal4
Exon Skipping
Gene
ENSGALG00000003175 | STKLD1
Description
serine/threonine kinase-like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:28669]
Coordinates
chr17:6891134-6892326:+
Coord C1 exon
chr17:6891134-6891178
Coord A exon
chr17:6891492-6891566
Coord C2 exon
chr17:6892222-6892326
Length
75 bp
Sequences
Splice sites
3' ss Seq
TTTTTATTTATTCTATGCAGGCA
3' ss Score
8.8
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GTTGAATGCATTGATGAAAAGCAAGCAAATGAGGCCTTGAAGGAG
Seq A exon
GCAATGGGTTTGCTACAACTTCATCATTCAAGCATCTGTGCTTACAAGGAAATGTTTGTGACTTGGGATAATGAG
Seq C2 exon
ATATCATCTCTGTACCTTTGTCTGGTAATGCAGCACTCAGGCCAAGTGGATCTTTCATCTCTGATCAAGACAAAAAGGCAGAAGCCAGAGAAAATAGCAGACGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003175-'4-3,'4-2,6-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(5.1=100)
A:
PF0006920=Pkinase=FE(8.8=100)
C2:
PF0006920=Pkinase=FE(12.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATTGATGAAAAGCAAGCA
R:
CACGTCTGCTATTTTCTCTGGCT
Band lengths:
144-219
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]