GgaEX6015434 @ galGal4
Exon Skipping
Gene
ENSGALG00000001964 | INPP5E
Description
inositol polyphosphate-5-phosphatase E [Source:HGNC Symbol;Acc:HGNC:21474]
Coordinates
chr17:7877831-7878945:+
Coord C1 exon
chr17:7877831-7877928
Coord A exon
chr17:7878547-7878671
Coord C2 exon
chr17:7878826-7878945
Length
125 bp
Sequences
Splice sites
3' ss Seq
GCTGTTGTTCTCTCCTGCAGAAG
3' ss Score
10.93
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GAACTTCCAGAGAATCTGGATGACTTCTTGTTGCCAACAGATCCTGACTATGCCCAGGACATGTATGTCATTGGGGTTCAAGAAGGCTGTCCAGACAG
Seq A exon
AAGAGAGTGGGAAATCCGCCTCCAGGAGACGCTGGGCCCCCACTACGTCATGCTCTACTCTGCTGCGCACGGAGTGCTCTACATGTCAGTCTTCATTCGAAGGGACCTGATCTGGTTCTGCTCAG
Seq C2 exon
AAGTGGAATATGCCACAGTGACAACTCGAATCGTATCTCAGATCAAAACCAAGGGAGCTCTGGGAATCTGCTTCACGTTTTTTGGGACCTCCTTTCTCTTTATTACCTCCCATTTCACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001964-'7-7,'7-5,9-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0337218=Exo_endo_phos=FE(11.4=100)
A:
PF0337218=Exo_endo_phos=FE(14.9=100)
C2:
PF0337218=Exo_endo_phos=FE(14.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGAATCTGGATGACTTCTTGT
R:
TGTGAAATGGGAGGTAATAAAGAGA
Band lengths:
210-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]