MmuEX0024216 @ mm10
Exon Skipping
Gene
ENSMUSG00000026925 | Inpp5e
Description
inositol polyphosphate-5-phosphatase E [Source:MGI Symbol;Acc:MGI:1927753]
Coordinates
chr2:26400373-26401698:-
Coord C1 exon
chr2:26401601-26401698
Coord A exon
chr2:26400886-26400908
Coord C2 exon
chr2:26400373-26400492
Length
23 bp
Sequences
Splice sites
3' ss Seq
ATGTCCCTGTTTATCCGTAGGGA
3' ss Score
10.6
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GAGCTCCCAGCGAGCCTGGATGAGTTTCTGCTCCCCACCGAGGCTGACTACACTCAGGACCTGTATGTCATTGGAATTCAGGAGGGCTGCTCTGACAG
Seq A exon
GGACCTCATCTGGTTCTGCTCAG
Seq C2 exon
AGGTCGAGTACTCCACAGTAACTACACGCATCGTGTCTCAGATCAAGACCAAGGGGGCCCTGGGCGTCAGCTTCACCTTTTTTGGCACCTCCTTCCTCTTCATCACATCTCACTTCACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026925-'8-9,'8-8,9-9
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.018 C2=0.000
Domain overlap (PFAM):
C1:
PF0337218=Exo_endo_phos=FE(11.4=100)
A:
PF0337218=Exo_endo_phos=FE(4.0=100)
C2:
PF0337218=Exo_endo_phos=FE(14.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGGCTGACTACACTCAGGA
R:
GCCCCCTTGGTCTTGATCTGA
Band lengths:
118-141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types