RnoEX0044222 @ rn6
Exon Skipping
Gene
ENSRNOG00000019039 | Inpp5e
Description
inositol polyphosphate-5-phosphatase E [Source:RGD Symbol;Acc:620478]
Coordinates
chr3:3846547-3847926:-
Coord C1 exon
chr3:3847829-3847926
Coord A exon
chr3:3847088-3847212
Coord C2 exon
chr3:3846547-3846666
Length
125 bp
Sequences
Splice sites
3' ss Seq
AACCTGCCTCCTCCCCACAGGCG
3' ss Score
11.89
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GAGCTTCCGGCAAGCCTGGATGAGTTTCTGCTTCCCACCGAGGCTGACTACACACAGGACCTGTATGTCATTGGCGTTCAGGAGGGCTGCTCTGACAG
Seq A exon
GCGGGAATGGGAGACACGCTTGCAGGAGACACTGGGCCCTCAGTATGTACTGCTGTCATCAGCAGCACATGGGGTCCTGTACATGTCCCTGTTTATCCGTAGGGACCTCATCTGGTTCTGCTCAG
Seq C2 exon
AGGTCGAGTACTCCACAGTAACTACACGCATCGTGTCTCAGATCAAGACCAAAGGGGCCCTGGGCGTCAGCTTCACCTTTTTTGGCACCTCCTTCCTCTTCATCACATCTCACTTCACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019039-'8-8,'8-6,9-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.023 C2=0.000
Domain overlap (PFAM):
C1:
PF0337218=Exo_endo_phos=FE(11.4=100)
A:
PF0337218=Exo_endo_phos=FE(14.9=100)
C2:
PF0337218=Exo_endo_phos=FE(14.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAAGCCTGGATGAGTTTCT
R:
AGGTGAAGTGAGATGTGATGAAGA
Band lengths:
210-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]