GgaEX6015461 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr17:8693122-8693771:+
Coord C1 exon
chr17:8693122-8693173
Coord A exon
chr17:8693293-8693403
Coord C2 exon
chr17:8693668-8693771
Length
111 bp
Sequences
Splice sites
3' ss Seq
CGTGTCATTTCCTACCATAGGCA
3' ss Score
9.05
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GCAAAGAGAAGCATTTGTGCTGCCTTCCAAAGGGTATGAGGATACAGCAGGG
Seq A exon
GCATATCAGCTCCAGCAGAAGCAGTGGCTGACAGTGCTGAGTGAGAAAGCCAAGCTAGAGCTTCAGGAAAGCCAGAGGTTTTTGAGTGACCTGCTTCAGAATGATGTGAAG
Seq C2 exon
CTGTGCAGTAGTTCCAAAGGCAGTGATTCCCCTGTGCTGAAGCTGGACCATGCAGAGCATACACGGGCAGGACGCCAGCCTGCAGGTGACAGCACAGCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001762-'1-1,'1-0,2-1=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAAGCATTTGTGCTGCCT
R:
GCTGTGCTGTCACCTGCAG
Band lengths:
146-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]