HsaEX1007398 @ hg38
Exon Skipping
Gene
ENSG00000260220 | CCDC187
Description
coiled-coil domain containing 187 [Source:HGNC Symbol;Acc:HGNC:30942]
Coordinates
chr9:136274883-136276727:-
Coord C1 exon
chr9:136276651-136276727
Coord A exon
chr9:136276194-136276301
Coord C2 exon
chr9:136274883-136275007
Length
108 bp
Sequences
Splice sites
3' ss Seq
GCTGTGGGCTCTCCCTGCAGCTG
3' ss Score
10.33
5' ss Seq
GAGGTAGCA
5' ss Score
4.75
Exon sequences
Seq C1 exon
GTCAGCAGGAGGACCCATGTGTGAGATGCCTTCCCAACACCCAACAGAAGACCTCCAGCTTTCTGGATTCTCTGAAG
Seq A exon
CTGGACCAGCAGAAGCAGGCGTTGGCCCTCCTGCGGCAGCGGGCAGAGCTGGAGGCCCGGGAGACACAGCAGACCCTGGATGGGCTGCTCTTCAGGAGGCGGCTGGAG
Seq C2 exon
CAGCTGATGGAGAGACACTCGACCCAGGCCAGGCCAGAGGAGGCGTTGAAGCTGGAGCAGCCTCCGATGTGCAAGGACCGAGAGCCGACCACAGCCTCTCAGAGCACAGGGATGGCCACACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000260220_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.654 A=0.861 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGCAGGAGGACCCATGT
R:
CTGGGTGTGGCCATCCCT
Band lengths:
202-310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains