MmuEX1005987 @ mm10
Exon Skipping
Gene
ENSMUSG00000048038 | Ccdc187
Description
coiled-coil domain containing 187 [Source:MGI Symbol;Acc:MGI:3045295]
Coordinates
chr2:26265262-26267109:-
Coord C1 exon
chr2:26267012-26267109
Coord A exon
chr2:26266607-26266720
Coord C2 exon
chr2:26265262-26265386
Length
114 bp
Sequences
Splice sites
3' ss Seq
GGTGTGGGTTCTCATGACAGCTG
3' ss Score
6.09
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
Exon sequences
Seq C1 exon
GTCAGCAGGAGCCCGAGAGGCCACATTCTGGAGGCCTGTATGATGGGCACCTGACCAATTTCCAGCTGAAATCTTTGAGCTTTCTCAAGTCACTGAAG
Seq A exon
CTGGAGCAGCAGAAGCAGGAGCGAGCACTGGCCCTTCTGCAGCAGCGAGCAGAGCAGGAGGTGTGGGAGACACAGTTGTTGCTGGACCAGCTTCTCTTCAAACACCAGCTGAAG
Seq C2 exon
AGGCAGATGGAGAAACCCTCAGCCCAGCAAGGGCCAGAAGAGACTTCAAAATGGAAACAGCAGCAGATGTGTGGTGGCCCAGAGCCAAACACATTCTTTCTCCACACAGTGGAAACCAGATCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048038_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.455 A=0.171 C2=0.690
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGCAGGAGCCCGAGA
R:
TGGATCTGGTTTCCACTGTGTG
Band lengths:
222-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types