RnoEX0017873 @ rn6
Exon Skipping
Gene
ENSRNOG00000027392 | Ccdc187
Description
coiled-coil domain containing 187 [Source:RGD Symbol;Acc:1565512]
Coordinates
chr3:3717971-3719795:-
Coord C1 exon
chr3:3719695-3719795
Coord A exon
chr3:3719275-3719388
Coord C2 exon
chr3:3717971-3718071
Length
114 bp
Sequences
Splice sites
3' ss Seq
GGGTGTGGTTCTCATGACAGCTG
3' ss Score
6.76
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
Exon sequences
Seq C1 exon
CAGGTCAGCAGGAGCCCGAGAGGCCACATTCCAGAGGCCTGCATGATGGGCACCTGACCAATTTCCAGCTGAAATCTTCCAGCTTTCTCGTGTCACTGAAG
Seq A exon
CTGGACCAGCAGAAGCAGGAGCAAGCAATGGCCCTTCTGCGGCAGCGAGCAGAGCAGGAGGTGTGTGAGACACAAATGGCACTCGATGAACTTCTCTTCAAACAGCAGCTGAAG
Seq C2 exon
AGGTGGATGGAGAAACCCTCAGTCCAGCAAGGGCCAGAAGAGTCTTCAAAACAGAAACAGCAGCAGATGTGTGGTGGCCCAGAGCCGAGCACATTCTCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027392-'15-18,'15-17,16-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTCAGCAGGAGCCCG
R:
AGAGAGAATGTGCTCGGCTCT
Band lengths:
202-316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]