GgaEX6015575 @ galGal4
Exon Skipping
Gene
ENSGALG00000001253 | RC3H2
Description
ring finger and CCCH-type domains 2 [Source:HGNC Symbol;Acc:HGNC:21461]
Coordinates
chr17:8784303-8785923:-
Coord C1 exon
chr17:8785789-8785923
Coord A exon
chr17:8785159-8785266
Coord C2 exon
chr17:8784303-8784451
Length
108 bp
Sequences
Splice sites
3' ss Seq
AAAGTATTTCATTCTTTCAGACT
3' ss Score
6.84
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GCCAAAAGTAACTCATTATTACTTCAGAGAGAAGCAAATGCACTAGCCATGCAACAGAAGTGGAATTCTCTAGATGAAGGCAGTCGACTTACCTTAAATCTTTTAAGCAAGGATATTGATTTGAGGAATGGTGAG
Seq A exon
ACTGATTATAGTGAAGACTGTGCCGATACAAAGCCAGATCGAGACATTGAATTGGAGCTATCTGCTCTTGATACAGATGAACCTGATGGGCAGGGTGAACAAATAGAA
Seq C2 exon
GAGATTCTGGATATACAGCTGGGTATCAGTTCTCAAGATGATCAGCTGCTCAATGGAACAACTGTAGAGAATGGGCATCCACTAAAGCAGCACCAGAAAGAATCTATGGAACAGAAGAGACAAAGTTTAGGTGAAGACCTTGTGATTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001253-'20-23,'20-22,21-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=0.972 C2=0.640
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAATGCACTAGCCATGCA
R:
GGTCTTCACCTAAACTTTGTCTCT
Band lengths:
242-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]