RnoEX6016643 @ rn6
Exon Skipping
Gene
ENSRNOG00000009196 | Rc3h2
Description
ring finger and CCCH-type domains 2 [Source:RGD Symbol;Acc:1304833]
Coordinates
chr3:21628506-21629311:-
Coord C1 exon
chr3:21629177-21629311
Coord A exon
chr3:21628754-21628861
Coord C2 exon
chr3:21628506-21628654
Length
108 bp
Sequences
Splice sites
3' ss Seq
AATATTTTCTTTATTTACAGAAT
3' ss Score
8.58
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GCCAAGAGTAACTCATTACTTCTTCAGAGGGAAGCTAATGCTCTGGCCATGCAACAAAAGTGGAATTCCCTGGATGAAGGCCGTCATCTTACTTTAAATCTCCTAAGCAAGGAAATTGAACTGAGAAATGGAGAG
Seq A exon
AATGATTACACAGAAGACACTGTAGATACCAAGCCTGATAGAGATATTGAGTTAGAACTTTCAGCCCTTGATACTGATGAGCCTGATGGCCAAAGTGAACAAATTGAA
Seq C2 exon
GAAATTCTGGACATACAACTTGGTATCAGTTCTCAAAATGATCAGTTGCTAAATGGAACTGCAGTGGAAAATGGTCATCCTGTCCAGCAGCACCAAAAGGACCCCGTAAAGCAGAAGAGACAGAGTTTAGGTGAAGACCATGTGATTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009196-'26-32,'26-30,27-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.178 A=0.958 C2=0.610
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAATGCTCTGGCCATGCAACA
R:
CACATGGTCTTCACCTAAACTCTGT
Band lengths:
244-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]