MmuEX6100908 @ mm10
Exon Skipping
Gene
ENSMUSG00000075376 | Rc3h2
Description
ring finger and CCCH-type zinc finger domains 2 [Source:MGI Symbol;Acc:MGI:2442789]
Coordinates
chr2:37376661-37377268:-
Coord C1 exon
chr2:37377134-37377268
Coord A exon
chr2:37376889-37376996
Coord C2 exon
chr2:37376661-37376790
Length
108 bp
Sequences
Splice sites
3' ss Seq
AATTTTTTTTTAATTTATAGAAT
3' ss Score
7.97
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GCCAAGAGTAACTCATTACTTCTTCAGAGGGAAGCTAATGCTCTGGCCATGCAACAAAAGTGGAATTCCCTGGATGAAGGCCGTCACCTTACTTTAAATCTTCTAAGCAAGGAAATTGAACTAAGAAATGGAGAG
Seq A exon
AATGACTACACAGAAGACACTGTAGATACAAAGCCTGATAGGGATATTGAGTTAGAGCTTTCAGCCCTTGATACTGATGAACCTGATGGCCAGAGTGAACAAATTGAA
Seq C2 exon
GAAATTTTGGACATACAACTTGGTATCAGTTCTCAAAATGACCAGTTGCTCAATGGAACAGCAGTGGAAAATGGTCATCCAGCCCAGCAGCACCAGAAGGACCCAGGAAAGCCGAAGAGACAGAGTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075376-'38-46,'38-44,39-46
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.237 A=1.000 C2=0.810
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTCATTACTTCTTCAGAGGGAA
R:
CTGTCTCTTCGGCTTTCCTGG
Band lengths:
249-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types