GgaEX6015799 @ galGal3
Exon Skipping
Gene
ENSGALG00000001111 | DNAH9
Description
NA
Coordinates
chr18:1015837-1019795:+
Coord C1 exon
chr18:1015837-1015995
Coord A exon
chr18:1016865-1016995
Coord C2 exon
chr18:1019584-1019795
Length
131 bp
Sequences
Splice sites
3' ss Seq
TAATGTCTTGGTTGTTGCAGGTG
3' ss Score
7.99
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CCCGGAGCGGATAGATAAATCTCTTGTGCATGCCACGGAGTCGGCTATCATAGACTGGAGCTACCAGATCCAGAGAGCACTGAAGAAAGAGTCCTCAGAGCCTCTCCTGCAAGGCAGTAATCCCAACCCCAAGGTGGAACTGGAGTTCTGGAAGAACAG
Seq A exon
GTGTGATGACCTGGAGTGCATTTACAGTCAGCTGAGGACAAGGAAGGTTAGGAACATGATGGAGATGCTAGAGAGAGTTGAGAGCAGCTACTTACCAGCCTTCAGAACTATGCTCATGGATGTTGAAGCAG
Seq C2 exon
CTTTGAGCGAAGCCCAGGACATCCACCTGCACCTGAAGCCCCTCAGGCGCCCTTTGGAGGACATAGAGAGGACTGATTTCAGCAAGGTGCAGCCACTCCTGCTCCCCCTGCTCCACGTGGTGTGCTTGACCTGGGTCACCTCCAAGCACTACAGCCAGCCTGCACGCATTGTGGTGCTGCTGCAGGAGATCTGCAACCTTCTCATCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.148 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PU(8.2=88.9)
A:
PF083857=DHC_N1=FE(7.6=100)
C2:
PF083857=DHC_N1=FE(12.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTAATCCCAACCCCAAGG
R:
TGCTGGATGAGAAGGTTGCAG
Band lengths:
257-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]