MmuEX0015109 @ mm10
Exon Skipping
Gene
ENSMUSG00000056752 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:66147193-66156978:-
Coord C1 exon
chr11:66156820-66156978
Coord A exon
chr11:66155417-66155547
Coord C2 exon
chr11:66147193-66147404
Length
131 bp
Sequences
Splice sites
3' ss Seq
CCCCCTCCTGGGCATTGCAGGTG
3' ss Score
8.41
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CTCAGATGCCATAGACAAGTCAACTCTCTATGCTGTGGAGTCTGCAGTGATCAAATGGAGCCACCAAGTCCAGGTGGTACTCAAGAGGGAGTCTTCTCAGGCACTCATACAAGGACAAAATCCCACCCCCAAGGTGGAGCTGGAGTTCTGGAAGAGCAG
Seq A exon
GTGTGAGGACCTGGAACACATTTATAATCAACTAATGACAATCAAGGTGAAGGGAATGGCTGAACTCCTGGACAAACTTCAGAGCAGCTACTTGCCAGCTTTCAAAGCCATGTTCAGAGACGTTGAAGCAG
Seq C2 exon
CCCTGACCGAGGCCCAGGACATCCATGTGCACCTGTTACCTCTCCAGCAACACCTGGACATCCTGGAAAACGTGGAGTTTCCCAAGGTGAAGGGCAGGCTGCGGCCTCTGCTCCATGTGGTCTGTCTGATTTGGGCCACCTGCAAATGGTACCGTTCCCCTGGGAGGCTCACAGTGCTGCTCCAAGAAATCTGCAACCTCCTCATCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752-'3-8,'3-6,4-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PU(10.9=88.9)
A:
PF083857=DHC_N1=FE(10.0=100)
C2:
PF083857=DHC_N1=FE(12.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGGAGTCTGCAGTGATC
R:
TCAGACAGACCACATGGAGCA
Band lengths:
257-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types