HsaEX7009221 @ hg38
Exon Skipping
Gene
ENSG00000007174 | DNAH9
Description
dynein axonemal heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr17:11610396-11617622:+
Coord C1 exon
chr17:11610396-11610554
Coord A exon
chr17:11611650-11611780
Coord C2 exon
chr17:11617411-11617622
Length
131 bp
Sequences
Splice sites
3' ss Seq
CCTTCTTCATGATATTGCAGGTA
3' ss Score
8.37
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CTTGGATTCTATAGATAAGTCAGTCATCTATGCCATTGAGTCTGCAGTGATCAAATGGAGCTACCAAGTCCAGGTGGTACTCAAGAGAGAGTCTTCCCAGCCACTCTTACAAGGGGAGAATCCCACCCCTAAGGTGGAGTTGGAGTTCTGGAAGAGCAG
Seq A exon
GTATGAAGATCTGAAATACATCTATAATCAACTGAGAACAATAACGGTGAGGGGCATGGCCAAGCTCCTGGACAAGCTTCAGAGTAGCTACTTTCCAGCTTTCAAAGCCATGTACAGAGATGTTGTTGCAG
Seq C2 exon
CTCTAGCAGAGGCACAGGACATCCATGTGCACCTGATACCGCTCCAGCGCCACCTGGAAGCTCTGGAGAATGCAGAATTTCCGGAGGTGAAGCCCCAGCTGCGGCCCCTGCTCCACGTGGTCTGTCTGATTTGGGCCACATGCAAGTCCTACCGCTCCCCGGGAAGGCTGACTGTGCTGCTCCAGGAGATTTGCAACCTTCTCATCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174-'4-8,'4-3,5-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PU(51.1=88.9)
A:
PF083857=DHC_N1=FE(75.9=100)
C2:
PF083857=DHC_N1=FE(12.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGCTACCAAGTCCAGGTG
R:
ACTTGCATGTGGCCCAAATCA
Band lengths:
251-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains