DreEX6067086 @ danRer10
Exon Skipping
Gene
ENSDARG00000103383 | dnah9
Description
dynein, axonemal, heavy chain 9 [Source:ZFIN;Acc:ZDB-GENE-020925-1]
Coordinates
chr12:192552-193956:-
Coord C1 exon
chr12:193798-193956
Coord A exon
chr12:193590-193720
Coord C2 exon
chr12:192552-192763
Length
131 bp
Sequences
Splice sites
3' ss Seq
TCCTTTATGTTGTGTTACAGGCT
3' ss Score
10.26
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
GTTTCATGTGGTGGATAAAAGCCTGATTCACTCAATGGAGACGGTGGTGATTGACTGGAGTCATCAGGTCTATAAGGTCTTGAAGAAGGACTCGTCTGAGCCGCTGCTGGAGGGCCGAAATCCCACTCCACATGCAGAGATACAGTTCTGGAGAAACAG
Seq A exon
GCTTGCTGATCTTCAGGGAATCCAACAGCAGCTCCAGTCTTCTAAAGTCCTGACGCTGGCGGAGCTTCTGCTCGCTGTGGACAGCAGCTATTATCCTGCATTTGCAAAAATGATCCAGGACGTCATGGAAG
Seq C2 exon
CTCATAACGAGTCGAAGAACATCACAACCTTCCTGAAGCCGCTGGAGAGGCTGATCGAGGATCTGGAGAACGCAGACTTCACTGAGCTGAAGGCAAAGATCCCTCCGCTCATGCACACGGTGTGTCTGATCTGGGCCAACTGCAGATACTACAGCAAACCAGCCCGAGTCATTGTGCTCCTGCAGGAGATCTGCAACCTCCTCATACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103383-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PU(11.3=88.9)
A:
PF083857=DHC_N1=FE(10.4=100)
C2:
PF083857=DHC_N1=FE(16.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCAATGGAGACGGTGGTG
R:
CATGAGCGGAGGGATCTTTGC
Band lengths:
244-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]