BtaEX6087283 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:30974868-30981643:+
Coord C1 exon
chr19:30974868-30975026
Coord A exon
chr19:30975641-30975771
Coord C2 exon
chr19:30981432-30981643
Length
131 bp
Sequences
Splice sites
3' ss Seq
TGCTTCTCCTTGTGTTGCAGGTG
3' ss Score
11.35
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CTTGGATTCTACGGACAAGTCCATCATCTATGCCATTGAGTCTGCAGTGATCCAGTGGAGCCACCAAATCCAGCTGGTGCTCAAGAGAGAGTCTTCGCAGCCGCTCCTCCAGGGGGAGAACCCTACCCCACAGGTGGAGCTGGAGTTCTGGAGGACCAG
Seq A exon
GTGTGAAGATCTGGAATACATTTATAATCAGCTGAGAATGATAAAGAGGAGGGGCATGGTGGGACTTCTGGATAAGCTTCAGAGCAGCTACTTTCCAGCTTTCCAAGCCATGTTCCGAGACATTGGAGCAG
Seq C2 exon
CTCTGACGGAGGCGCGGGACATCTACACCCACCTGGCGCCACTGCGTCGTCACCTGGAGGACCTCGAGAGCCTGGAGTTTCCTGACGTGAAGCCCCGGCTGCGGCCCCTGCTGCACGTGGTCTGCCTGATCTGGGCCATGTGTGAGTCTTACCGCTGCCCAGGGCGGCTCACAGTGCTGCTGCAAGAGATCTGCAACCTTCTGGTCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509-'3-4,'3-2,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PU(8.2=88.9)
A:
PF083857=DHC_N1=FE(7.5=100)
C2:
PF083857=DHC_N1=FE(12.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGTGCTCAAGAGAGAGTC
R:
GCAGCGGTAAGACTCACACAT
Band lengths:
245-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]