GgaEX6016373 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NW73]
Coordinates
chr18:8185068-8185889:-
Coord C1 exon
chr18:8185810-8185889
Coord A exon
chr18:8185674-8185729
Coord C2 exon
chr18:8185068-8185168
Length
56 bp
Sequences
Splice sites
3' ss Seq
TGATTTCCATTTCTCCACAGTCA
3' ss Score
9.15
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GTTCCCCTCTTTGCTTGTCTACAAGGTCCCAATGGAAGATGCACTGCCCCTATCTCAGTCTTTCTCCAAGATAGAGGAAG
Seq A exon
TCAAACAAAACTTCAACCTCGAGGAGTACAGCTTCTCTTTGAATACTTTGGCTCAG
Seq C2 exon
GTCTTTTTGGAACTCTCCAGAGAGCAGGAGAAGGATAATTTTGATCTCACTTTGGATGGCCCTTTTGAATGGAAACAACTTCAGCAGGAGGACAGTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021399-'40-48,'40-47,41-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCACTGCCCCTATCTCAGT
R:
CTGTCCTCCTGCTGAAGTTGT
Band lengths:
137-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]