Special

MmuEX0003029 @ mm9

Exon Skipping

Gene
ENSMUSG00000020620 | Abca8b
Description
ATP-binding cassette, sub-family A (ABC1), member 8b [Source:MGI Symbol;Acc:MGI:1351668]
Coordinates
chr11:109793504-109797109:-
Coord C1 exon
chr11:109797030-109797109
Coord A exon
chr11:109796037-109796092
Coord C2 exon
chr11:109793504-109795925
Length
56 bp
Sequences
Splice sites
3' ss Seq
ATGCATTTCTCCTTATACAGTTA
3' ss Score
5.99
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTACTCTTCTCTGATGGCTTACAAATTACCAGTGGAAGCTGTACAGCCTTTATCCCAAGCTTTCTTCAAGTTAGAGAAAG
Seq A exon
TTAAGCAGACCTTTGACCTGGAGGAGTACAGCCTCTCTCAGTCTACCCTGGAGCAG
Seq C2 exon
GTCTTCCTAGAGCTCTCCAAGGAGCAGGAGCTGGATGGCCTTGAATTAGAAGAATTAGACTCCTCCATAAAGTGGAAGCTCCTCCCACAGGAAGAGGCTTAAGCCAAAAATATCTCTCCTCTTCCTTCATAAGACTGTGTTGTTCCTTAAAGACATCTATTTTTATGAAATATTTTAGTACCTATATTATAAATACTATGATGTTCCTCGGGGATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAACCTTGTCTAGCCTTCTCCACATCCCTTTAGGACACTTATAGCCATAGTTCTGTAGAATGTTGAATAAACAGTTACTTTTATACAATTATTTCCATTTCTGAGTATGATATACTTAGTTAAAATATTTTAGATAATTTTTTGTATCAAAACCGTAGGCTTAGATTTTTCAAAACCAACTTTAATAAGGGTTCTTAAGTTCTTCAACCTCTCTTCTAGCTCACCAACCAAAGGTAGGAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020620_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (No Ref, Alt. Stop)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NO

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000020948





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000102280
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr17:66864442-66864497 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr19:62161277-62161331 
Chicken
(galGal4)
chr18:8185674-8185729 
HIGH PSI
GgaEX6016373
([1])
Chicken
(galGal3)
chr18:7920368-7920423 
HIGH PSI
GgaEX6016373
([2])
Zebrafish
(danRer10)
chr12:38676815-38676870 
HIGH PSI
DreEX6070622
(abca5)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TGTACAGCCTTTATCCCAAGCT

				
R: 
TAAGCCTCTTCCTGTGGGAGG

				
Band lengths: 
142-198

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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