MmuEX0003029 @ mm10
Exon Skipping
Gene
ENSMUSG00000020620 | Abca8b
Description
ATP-binding cassette, sub-family A (ABC1), member 8b [Source:MGI Symbol;Acc:MGI:1351668]
Coordinates
chr11:109932190-109935795:-
Coord C1 exon
chr11:109935716-109935795
Coord A exon
chr11:109934723-109934778
Coord C2 exon
chr11:109932190-109934611
Length
56 bp
Sequences
Splice sites
3' ss Seq
ATGCATTTCTCCTTATACAGTTA
3' ss Score
5.99
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTACTCTTCTCTGATGGCTTACAAATTACCAGTGGAAGCTGTACAGCCTTTATCCCAAGCTTTCTTCAAGTTAGAGAAAG
Seq A exon
TTAAGCAGACCTTTGACCTGGAGGAGTACAGCCTCTCTCAGTCTACCCTGGAGCAG
Seq C2 exon
GTCTTCCTAGAGCTCTCCAAGGAGCAGGAGCTGGATGGCCTTGAATTAGAAGAATTAGACTCCTCCATAAAGTGGAAGCTCCTCCCACAGGAAGAGGCTTAAGCCAAAAATATCTCTCCTCTTCCTTCATAAGACTGTGTTGTTCCTTAAAGACATCTATTTTTATGAAATATTTTAGTACCTATATTATAAATACTATGATGTTCCTCGGGGATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAACCTTGTCTAGCCTTCTCCACATCCCTTTAGGACACTTATAGCCATAGTTCTGTAGAATGTTGAATAAACAGTTACTTTTATACAATTATTTCCATTTCTGAGTATGATATACTTAGTTAAAATATTTTAGATAATTTTTTGTATCAAAACCGTAGGCTTAGATTTTTCAAAACCAACTTTAATAAGGGTTCTTAAGTTCTTCAACCTCTCTTCTAGCTCACCAACCAAAGGTAGGAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020620_MULTIEX2-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSMUST00000020948fB5146
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACAGCCTTTATCCCAAGCT
R:
TAAGCCTCTTCCTGTGGGAGG
Band lengths:
142-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types