DreEX6070622 @ danRer10
Exon Skipping
Gene
ENSDARG00000074041 | abca5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:ZFIN;Acc:ZDB-GENE-050517-5]
Coordinates
chr12:38676642-38681547:+
Coord C1 exon
chr12:38676642-38676721
Coord A exon
chr12:38676815-38676870
Coord C2 exon
chr12:38680039-38681547
Length
56 bp
Sequences
Splice sites
3' ss Seq
GTTTTTTTTTTCCTCCACAGCTA
3' ss Score
11.44
5' ss Seq
CAAGTATGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
TTTTGCCACTATGATGGTGTATAAAATCCCAATGGAAGATGTGAAGTCTTTAGCCAAGTCTTTTGCCCAGTTAGAAAGTG
Seq A exon
CTAAACAGAACTTCAACTTTGAAGAGTACAACTTTTCCCAGTCAACTCTTGAACAA
Seq C2 exon
GTTTTCATGGAGTTTGCCAAGGAGCAGGAGAACGAGGAAGAAGAGGTCGGATCACTAAGCACGACTTTTCAATGGCAGAGACTGAGACAGGACGGCCCTGTATCTATTAATCACGCTGACAGCATAGTACACCAGCTATGAACCAATCCTGTTCCCTGAAGCGTTCTGCCCTTGCCTCTTTCTCCTTTTCCTTCGTTCTGCATGTGCCGTCTTTTGCCTTAAGAGCCTTAAACCCATGGGACTCACAGGACAATCGACTCCAGAGACTCCAATGGCCACTAACGCACACTAATAACGTGTGTATGTGTGTGTGTGTTTATGTGGCTCTGGCACTGGCACTTGCTCAGAAGGAATCAGACACACGACTTGAGTGTCATCCGTTAAACACAGAGCTAGACTCGTCGTCATCTGTTTTTACAACGACAAAAAAAAAAAGATTTTATTTTTTAAACTCTCACTTCTACTTGTATCTATCAAGCTCACTGTTTTCTTGTGTCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074041-'44-46,'44-45,45-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.043
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAAGTCTTTTGCCCAGTT
R:
GCGTGATTAATAGATACAGGGCCG
Band lengths:
145-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]