GgaEX1005403 @ galGal4
Exon Skipping
Gene
ENSGALG00000004333 | ABCA5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:HGNC Symbol;Acc:HGNC:35]
Coordinates
chr18:8232456-8233753:-
Coord C1 exon
chr18:8233674-8233753
Coord A exon
chr18:8233359-8233414
Coord C2 exon
chr18:8232456-8232822
Length
56 bp
Sequences
Splice sites
3' ss Seq
TTCTCACACTCTTTTAACAGTGA
3' ss Score
8.27
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
CTTTGCTTCTATCTTGGCATATAAAATCCCTAGAGAAGACGTACAGTCGCTTTCACATTGTTTTTCCAAGCTGGAGGAAG
Seq A exon
TGAAATACGCCTTTAACATTGAGGAGTACAGCTTTTCTCAGGCAACTCTGGAACAG
Seq C2 exon
GTCTTTGTGGAGCTGGCCAAGGAGCAGGAGGAGGAGGAGGGCAGCTTTGGCACACTGAACAGCACGCTGTGGTGGGACCGGACACAGGAGGACCGGGTGGTGTTCTGAACGGTGATCCCAGCACTGCTGTGCTGGGGGAGCTGCGTGGGAACTTCAATGCTGGGACAGAGCAGGAAGAGGATGGCATTCAGAAACGCTGAGCACTGATATGTGAGGTGTGCTGCAACTGTGGAGCAGGCAGTGAGGCTCCCCAGGCTGCTGGGAAATTCCTGCTCTGCCAGTTGATTCCCGGTTTGCATGGAGGGAGGAGATGCTACTGGGATGGCCTCTGGTCCCCTGGGGCTGGTGGTTTAGCACAGCAGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004333-'39-48,'39-47,40-48
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACATTGTTTTTCCAAGCTGGA
R:
GGGATCACCGTTCAGAACACC
Band lengths:
147-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]