MmuEX6090930 @ mm10
Exon Skipping
Gene
ENSMUSG00000018800 | Abca5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:MGI Symbol;Acc:MGI:2386607]
Coordinates
chr11:110269369-110274399:-
Coord C1 exon
chr11:110274320-110274399
Coord A exon
chr11:110273326-110273381
Coord C2 exon
chr11:110269369-110272566
Length
56 bp
Sequences
Splice sites
3' ss Seq
GCATTTTTATGTTTTAATAGCAA
3' ss Score
6.11
5' ss Seq
CAGGTACCG
5' ss Score
10.05
Exon sequences
Seq C1 exon
CTTTTCTTCTATTTTGGCTTTTAAAATTCCAAAAGAAGATGTTCAGTCTCTCTCACAATCCTTCGCTAAGTTGGAAGAAG
Seq A exon
CAAAACGCACTTTTGCCATTGAAGAATACAGCTTTTCTCAAGCAACCCTGGAACAG
Seq C2 exon
GTTTTTGTAGAACTTACTAAAGAGCAAGAGGAAGAAGATAACAGCTGTGGGACTTTGGCCAGCACTCTCTGGTGGGAAAGGACGCAGGAGGATAGAGTAGTATTTTGAATGTTTATGCTCACCCAGCCTACCGACCCTGAGTTGGTTTATTCTTTTTTATTCTATTTTTTTCTTCTTTTATCTTATCTTTGATTTTAAAAGCTTATTACTTGAATAGTTATTAAAAAAAATGAAAGCACTTGGAAATTTCTTAAAGTCCTTAATTAACACACCATGGTTATGGTTTGGATTTTCTTTCAATAAATTTGCGTGTAATTGTCCATGTGCATGTTTATATCTGAAGGTAGTCTATATGCCTACCTTCACGTTTCACAAAAACAATATTTCTCAACTTAGGATTTAAAGAAATAATAAAAGAATAATTCTGAATAATATTTAAATTTTATACTATGTTACATAATTATGTAATTTCCCAGTGCTAATTAAAAAGACCAGTGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018800-'53-54,'53-53,54-54
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCTCTCTCACAATCCTTCGC
R:
ACTCTATCCTCCTGCGTCCTT
Band lengths:
135-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types