RnoEX0004898 @ rn6
Exon Skipping
Gene
ENSRNOG00000004378 | Abca5
Description
ATP binding cassette subfamily A member 5 [Source:RGD Symbol;Acc:628661]
Coordinates
chr10:98576039-98578122:-
Coord C1 exon
chr10:98578043-98578122
Coord A exon
chr10:98577103-98577158
Coord C2 exon
chr10:98576039-98576352
Length
56 bp
Sequences
Splice sites
3' ss Seq
CTATTTTTACATTTTAATAGCAA
3' ss Score
5.93
5' ss Seq
CAGGTATTG
5' ss Score
8.35
Exon sequences
Seq C1 exon
CTTCTCTTCTATTCTGGCTTATAAAATTCCAAAAGAAGATGTCCAGTCTCTCTCACAGTCCTTTGCTAAGTTGGAGGAAG
Seq A exon
CAAAACACACTTTTGCCATTGAAGAATACAGCTTTTCTCAAGCAACCCTGGAACAG
Seq C2 exon
GTTTTTGTAGAACTTACTAAGGAGCAGGAGGAGGAAGATAATAGCTGCGGGACTTTAAACAGCACGCTCTGGTGGGAAAGAAGGCAGGAAGACAGAGTCGTGTTCTGAATGTCTGCGCTCACCCCGCCTGCTGACCCTGAACTTACTCTTTTTTATTTTGTTTTTCCTTCTTTTATCTTAACTTTGATTTTAAAAGTTTATTACTTGAATAGTCACAAAACATGAAAGCACTTGGAAATTTCCTAAACTCCTTAATTTATGCACCATGGTTATTTATGTGTCTGGGTTTTCTTTAAATAAATGTGTGTGTAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004378-'45-50,'45-49,46-50
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCAGTCTCTCTCACAGTCC
R:
ACGACTCTGTCTTCCTGCCTT
Band lengths:
142-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]