HsaEX0000273 @ hg19
Exon Skipping
Gene
ENSG00000154265 | ABCA5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:HGNC Symbol;Acc:35]
Coordinates
chr17:67240576-67246125:-
Coord C1 exon
chr17:67245960-67246125
Coord A exon
chr17:67244403-67244458
Coord C2 exon
chr17:67240576-67243785
Length
56 bp
Sequences
Splice sites
3' ss Seq
CTATTTTTATATTTTAATAGCTA
3' ss Score
6.47
5' ss Seq
CAGGTACTA
5' ss Score
7.64
Exon sequences
Seq C1 exon
TTTTTCTTCTATTTTGGCTTATAAAATTCCTAAGGAAGATGTTCAGTCCCTTTCACAATCTTTTTTTAAGCTGGAAGAAGGTAAGTAGTATCTTCTATTTTGGCTTATAAAATTCCTAAGGAAGATGTTCAGTCCCTTTCACAATCTTTTTTTAAGCTGGAAGAAG
Seq A exon
CTAAACATGCTTTTGCCATTGAAGAATATAGCTTTTCTCAAGCAACATTGGAACAG
Seq C2 exon
GTTTTTGTAGAACTCACTAAAGAACAAGAGGAGGAAGATAATAGTTGTGGAACTTTAAACAGCACACTTTGGTGGGAACGAACACAAGAAGATAGAGTAGTATTTTGAATTTGTATTGTTCGGTCTGCTTACTGGGACTTCTTTCTTTTTCACTTAATTTTAACTTTGGTTTAAAAAGTTTTTTATTGGAATGGTAACTGGAGAACCAAGAACGCACTTGAAATTTTTCTAAGCTCCTTAATTGAAATGCTGTGGTTGTGTGTTTTGCTTTTCTTTAAATAAAACGTATGTATAATTAAGTGAAGCTGCATGTTTGTATTGAAGTATATTGAACTATATAGTTTGTATGTCATCTTTTTCACCATTCAGAAACAGTGCTTCTGAATTTGTGATTTAAAGGAATTGTAATAGAATAGTTTTATTTTTAAGTTATCTTTAAGTTTATGCCATCTTCTTAAATAAGTACGTAATGTTCCAATCTAAATAAAAAACTAATTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154265_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTAAGGAAGATGTTCAGTCCCT
R:
GTTCCCACCAAAGTGTGCTGT
Band lengths:
132-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)