GgaEX1005403 @ galGal3
Exon Skipping
Gene
ENSGALG00000004333 | E1BY40_CHICK
Description
NA
Coordinates
chr18:7968206-7969244:-
Coord C1 exon
chr18:7969165-7969244
Coord A exon
chr18:7968850-7968905
Coord C2 exon
chr18:7968206-7968313
Length
56 bp
Sequences
Splice sites
3' ss Seq
TTCTCACACTCTTTTAACAGTGA
3' ss Score
8.27
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
CTTTGCTTCTATCTTGGCATATAAAATCCCTAGAGAAGACGTACAGTCGCTTTCACATTGTTTTTCCAAGCTGGAGGAAG
Seq A exon
TGAAATACGCCTTTAACATTGAGGAGTACAGCTTTTCTCAGGCAACTCTGGAACAG
Seq C2 exon
GTCTTTGTGGAGCTGGCCAAGGAGCAGGAGGAGGAGGAGGGCAGCTTTGGCACACTGAACAGCACGCTGTGGTGGGACCGGACACAGGAGGACCGGGTGGTGTTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004333-'36-38,'36-37,37-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTACAGTCGCTTTCACATTGT
R:
AGAACACCACCCGGTCCTC
Band lengths:
148-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]