RnoEX0004945 @ rn6
Exon Skipping
Gene
ENSRNOG00000004040 | Abca8
Description
ATP binding cassette subfamily A member 8 [Source:RGD Symbol;Acc:1307069]
Coordinates
chr10:98237141-98238584:-
Coord C1 exon
chr10:98238505-98238584
Coord A exon
chr10:98237351-98237406
Coord C2 exon
chr10:98237141-98237239
Length
56 bp
Sequences
Splice sites
3' ss Seq
ATTTATTTCTCCCTATACAGTTA
3' ss Score
7.96
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTACTCTCCTCTCATGGTTTACAAATTACCAGTGGAAGATGTGCAACCTTTATCCCAAGCGTTCTTCAAGTTAGAGAAGG
Seq A exon
TTAAGCAGACTTTTGACTTGGAAGAGTATAGCCTCTCTCAGTCTACCTTGGAGCAG
Seq C2 exon
GTCTTCTTAGAGCTCTCCAAGGAGCAAGAGATGGATGGCTTTGAGGAAGAACTAGACTCCTCTATAAAATGGAAGCTCCTCCCACAGGAAGAGGTTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004040-'48-51,'48-50,49-51
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGTGGAAGATGTGCAACC
R:
CCTGTGGGAGGAGCTTCCATT
Band lengths:
141-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]