GgaEX6016559 @ galGal3
Exon Skipping
Gene
ENSGALG00000007106 | DNAH17
Description
NA
Coordinates
chr18:9765636-9766610:+
Coord C1 exon
chr18:9765636-9765763
Coord A exon
chr18:9765915-9766142
Coord C2 exon
chr18:9766419-9766610
Length
228 bp
Sequences
Splice sites
3' ss Seq
ACACAGGGTTTGTCTTGCAGAAC
3' ss Score
7.6
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
GCAAGAAGCTGAATTTCACCATCGACAACGGGAGGATCCACAACGTCTCGCTGGGGCAGGGCCAGGAGGTGGTGGCGGAGCAGGCGCTGGAGGTGGCAGCAGCACAGGGGCACTGGGTCATCCTGCAG
Seq A exon
AACATCCACCTGGTGGCCCGCTGGCTGGGCACGCTGGAGAAGCGCATGGAGAGGCACAGCACAGACAGCCACCCCGACTACCGCGTGTTCATGAGCGCCGAGCCGGCCCCCAGCCCCGAGGCACACATCATCCCACAGGGGCTGCTGGAAAATGCCATTAAGATCACCAACGAGCCGCCCACTGGCATGCATGCCAACCTGCACAAAGCCCTCGACCTCTTCTCCCAG
Seq C2 exon
GACACGCTGGAGATGTGCAGCAAAGAGATTGAGTTCAAGTGCATCCTGTTTGCACTCTGCTACTTCCACGCCGTGGTGGCAGAAAGGCGCAAGTTTGGTGCCCAGGGCTGGAACCGCTCCTACCCCTTCAACAACGGGGACCTGACCATCTCCATTAATGTCCTGTACAATTACCTGGAGGCCAATCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106-'31-32,'31-31,32-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.105 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.0=100)
A:
PF0302810=Dynein_heavy=FE(10.7=100)
C2:
PF0302810=Dynein_heavy=FE(8.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAACGGGAGGATCCACAAC
R:
TGGGATTGGCCTCCAGGTAAT
Band lengths:
295-523
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]