DreEX6020704 @ danRer10
Exon Skipping
Gene
ENSDARG00000062630 | dnah9l
Description
dynein, axonemal, heavy polypeptide 9 like [Source:ZFIN;Acc:ZDB-GENE-050506-1]
Coordinates
chr6:10358597-10363330:-
Coord C1 exon
chr6:10363203-10363330
Coord A exon
chr6:10362896-10363123
Coord C2 exon
chr6:10358597-10358788
Length
228 bp
Sequences
Splice sites
3' ss Seq
GCTAAATGTGTTTCTTCTAGAAC
3' ss Score
7.21
5' ss Seq
CAGGTGAAA
5' ss Score
5.07
Exon sequences
Seq C1 exon
GTAAAAAACTTGGCTTCACTATAGACCTGGGGAAGCTTCATAATGTGTCTCTAGGGCAGGGCCAGGAATCTGTGGCTGAACTTGCCATGGAAAAGGCCTCGAGAGAAGGCCACTGGGTCATTTTACAG
Seq A exon
AACATTCACCTGGTGGCAAAGTGGCTGGGAAATCTAGAGAAGCTTCTGGAACATTGCTGTGAAGACAGTCATCAAGACTACAGAGTGTTCATGAGCGCTGAACCCTCACCCACTCCGCAGGAGCATATCATTCCACAGGGAATTCTGGAAAATTCCATCAAGATCACTAACGAGCCTCCCACAGGCATGCTGGCCAACCTGCACGCTGCTTTGGACAACTTTGATCAG
Seq C2 exon
GACATTCTGGACCAGTGTTCCCGTGAGCAGGAGTTTAAGACCATCCTGTTCTCGCTGTGTTATTTCCACGCCTGTGTGGCTGAGAGACGCAAATTTGGACCGCAGGGCTGGAACAGGAAGTACCCATTCAACACCGGAGATCTCACCATATCAGTCAACGTGCTCTACAACTACCTAGAAGCAAACTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062630-'70-73,'70-72,71-73=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=0.066 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.0=100)
A:
PF0302810=Dynein_heavy=FE(10.7=100)
C2:
PF0302810=Dynein_heavy=FE(8.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTTCACTATAGACCTGGGG
R:
GGTAGTTGTAGAGCACGTTGACT
Band lengths:
293-521
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]